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Contents
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5.2. Selecting the Master ...................................................................................... 5-9
5.3. Matching Spots ............................................................................................. 5-10
5.4. Landmarking Spots ....................................................................................... 5-14
5.5. Automated Matching ................................................................................... 5-17
5.6. Cybergels ...................................................................................................... 5-23
5.7. Adding Spots to the Master .......................................................................... 5-26
5.8. Edit Match Submenu .................................................................................... 5-29
5.9. Matching Summary ...................................................................................... 5-37
6.
Analysis Tools .................................................................... 6-1
6.1. Spot Review Tool ........................................................................................... 6-1
6.2. Image Stack Tool ............................................................................................ 6-5
6.3. Scatter Plot Tool ............................................................................................. 6-7
6.4. Replicate Groups ............................................................................................ 6-9
6.5. Group Consensus .......................................................................................... 6-13
6.6. Sample Database ........................................................................................... 6-17
6.7. Normalization ............................................................................................... 6-23
6.8. MrpI Data ...................................................................................................... 6-29
6.9. Standard Spot Numbers ................................................................................ 6-32
6.10. Database Spot Numbers .............................................................................. 6-34
7.
Analysis Sets and Annotations ........................................ 7-1
7.1. Analysis Sets ................................................................................................... 7-1
7.2. Annotation Tool ............................................................................................ 7-22
7.3. Browsing Annotations .................................................................................. 7-33
7.4. Creating Annotations from Analysis Sets ..................................................... 7-34
7.5. Printing Annotations ..................................................................................... 7-36
7.6. Transferring Annotations .............................................................................. 7-37
8.
Basic Excision Tool ........................................................... 8-1
8.1. Spot Cutter Setup ............................................................................................ 8-2
8.2. Cutting Spots .................................................................................................. 8-8
