4 sample preparation, 5 running conditions, 3 nondenaturing nucleic acid page buffers – Bio-Rad Mini-PROTEAN® TGX™ Precast Gels for 2-D Electrophoresis User Manual
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7.3 Nondenaturing Nucleic Acid PAGE Buffers
See Appendix B for buffer formulations. Do not adjust pH unless directed to do so.
Running buffer (1x)
89 mM Tris, 89 mM boric acid, 2 mM EDTA
Dilute 100 ml 10x stock (catalog #161-0733) with 900 ml diH
2
O
Sample buffer (5x)
50 mM Tris-HCl, pH 8.0, 5 mM EDTA, 25% (w/v) glycerol, 0.2% bromophenol
(catalog #161-0767)
blue, 0.2% xylene cyanole FF
7.4 Sample Preparation
Determine the DNA concentration of your sample based on the detection method used. (See Chapter 10
for approximate stain sensitivities.) Dilute 4 parts sample with 1 part sample buffer.
7.5 Running Conditions
Table 7.1. Running conditions for nondenaturing nucleic acid PAGE with one (1) Mini-PROTEAN TBE gel in the
Mini-PROTEAN Tetra cell. Run conditions and times are approximate and assume a constant voltage of 100 V. When running
more than one gel, current will differ.
5% Gels
10% Gels
15% Gels
4–20% Gels
Power conditions
100 V constant
100 V constant
100 V constant
100 V constant
Expected current (per gel)
Initial
15 mA
15 mA
15 mA
15 mA
Final
10 mA
10 mA
10 mA
10 mA
Run time
45–60 min
60–75 min
75–90 min
90–105 min
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