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Appendix a: theory and recipes – Hoefer SE900 User Manual

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Appendix A: Theory and Recipes

Laemmli System Gels

The Laemmli system is the most common electrophoresis protocol for
SDS-denatured proteins.

The leading ion in this discontinuous buffer system is chloride and the
trailing ion is glycine.

Accordingly, the resolving gel (and the optional stacking gel) contain
Tris-Cl buffers (of different concentration and pH), and the electro-
phoresis buffer contains Tris-glycine. All buffers contain 0.1% SDS.

Polyacrylamide gel composition is indicated by two
different percentages:

% T = total acrylamide = [g (acryl + bis)]

× 100

100

% C = crosslinker =

g (bis)

× 100

g (acryl + bis)

The total percent of acrylamide (% T) in the resolving gel, which
can range from 5 to 20%, determines the pore size. Commonly, the
amount of crosslinker used (% C) is 2.6%.