Canon CAPTUREPERFECT 3.1 - Manual (Page 81)

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Replace the page.
When "from Scanner" is selected
1) The Replace the page from the scanner dialog box is displayed.
2) Set the Scanner Settings, and click OK.
Scanning begins, and pages following the displayed page are replaced.
3) When there are no more documents, scanning stops.
When "from File" is selected
1) The Open dialog box is displayed.