Multichannel Systems IonFlux System User Manual
Ionflux, System

IonFlux
™
System
High Throughput Automated Patch Clamp with Plate Reader Simplicity
Optimized for throughput, 
flexibility, and superior 
performance 
 
Plate reader simplicity: Fluxion’s 
proprietary microfluidic flow control 
technology eliminates the need for 
pipetting and washing; it’s all handled 
automatically within the reader. The 
design ensures reliability and consis-
tency. 
 
Ligand-gated channel capability: 
Compound application takes less than 
100ms. Multiple compounds or con-
centrations can be applied in rapid 
succession to the same group of cells. 
Ideal for assaying ligand-gated chan-
nels. 
 
Continuous recording: The IonFlux 
reader continuously records from the 
whole plate during all phases of the 
protocol. Cells are continuously 
clamped. 
 
Highest throughput: Available with 
64 multiplexed amplifiers, the system 
can deliver 1,000 data points per hour. 
 
Cost-effective: Optimized design 
significantly reduces the cost per data 
point and initial system cost. 
 
Compact: The IonFlux system can sit 
on a benchtop, making it ideal for the 
typical lab environment. The system is 
designed to integrate with existing 
liquid handlers for fully automated, 
unattended operation. The IonFlux 
system integrates easily into high 
throughput screening workflows. 
The IonFlux System delivers a high throughput electrophysiology solution for 
ligand-gated and voltage-gated ion channels with “plate reader” simplicity. The 
system’s unique microfluidic well plate format eliminates pipetting steps, allows 
continuous recording of cell ensembles, and rapidly delivers compounds.
The IonFlux System delivers outstanding patch clamp performance in a complete, easy-to-use system. 
Designed for higher throughput screening, the system uses parallel-cell ensemble recording to improve 
reliability and minimize variability. Workflow is greatly simplified: once IonFlux plates are filled with cells 
and compounds - by any standard liquid handling system - the plates are loaded automatically into the 
IonFlux reader. The system’s unique microfluidic design automates all aspects of the compound 
application and recording protocol. No additional pipetting or washing steps are required. Voltage 
clamping occurs continuously throughout the entire experiment. This optimized design offers 
significant advantages in throughput and speed of compound application. 
Better System, Better Workflow
The IonFlux system is a benchtop instrument which provides up to 64 ion channel recordings in parallel. 
The system consists of 1) a “reader” for running the voltage protocol and managing fluid flow, 2)
software for experiment set-up, control, and analysis, and 3) IonFlux microfluidic plates for cell and 
compound handling. The use of a simple reader format, active fluidics, and 64 integrated amplifiers 
provides throughput capability of 1,000 data points per hour. 
 
IonFlux plates combine the ease of use of an SBS-standard well plate with the benefits of integrated 
fluidics. Plates are filled in the same way as traditional well plates. However, the plate bottom has been 
replaced by a microfluidic network. Cell introduction, seal formation, and rapid compound addition and 
exchange (<100 ms) are all accomplished using a pneumatic interface that seals automatically to the 
IonFlux plate inside the reader. Since the interface also includes the electrodes, fluid control and 
recording occur simultaneously; there is no need for a test-add-test discontinuous workflow. 
1.
The IonFlux reader has been 
designed for ease of use, 
reliability, and workflow sim-
plicity – just like a traditional 
plate reader. 
2.
IonFlux plates look and handle 
exactly like standard well 
plates. They can be filled by 
standard liquid handling sys-
tems. 
3.
In place of a solid bottom, the 
IonFlux plate has a microflu-
idic network connecting wells. 
The IonFlux reader includes 
an interface that seals to the 
wells and controls cell intro-
duction, trapping, seal forma-
tion, and compound introduc-
tion via software control. 
1
2
3
